>>> Building on localhost under misc/openbabel BDEPENDS = [archivers/bzip2;devel/cmake;textproc/libxml;devel/boost;textproc/rapidjson;graphics/cairo;devel/ninja;math/eigen3] DIST = [misc/openbabel:openbabel-3.1.1-source.tar.bz2] FULLPKGNAME = openbabel-3.1.1p3 RDEPENDS = [textproc/libxml;devel/boost;graphics/cairo] (Junk lock obtained for localhost at 1731550982.46) >>> Running depends in misc/openbabel at 1731550982.61 last junk was in x11/qt6/qtmultimedia /usr/sbin/pkg_add -aI -Drepair eigen3-3.4.0p0 libxml-2.13.4p0 rapidjson-1.1.0.20230928p0 was: /usr/sbin/pkg_add -aI -Drepair boost-1.84.0p4v0 bzip2-1.0.8p0 cairo-1.18.2p0 cmake-3.30.5v1 eigen3-3.4.0p0 libxml-2.13.4p0 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p0 /usr/sbin/pkg_add -aI -Drepair eigen3-3.4.0p0 libxml-2.13.4p0 rapidjson-1.1.0.20230928p0 >>> Running show-prepare-results in misc/openbabel at 1731550986.38 ===> misc/openbabel ===> Building from scratch openbabel-3.1.1p3 ===> openbabel-3.1.1p3 depends on: eigen3-* -> eigen3-3.4.0p0 ===> openbabel-3.1.1p3 depends on: rapidjson-* -> rapidjson-1.1.0.20230928p0 ===> openbabel-3.1.1p3 depends on: cmake-* -> cmake-3.30.5v1 ===> openbabel-3.1.1p3 depends on: ninja-* -> ninja-1.11.1p0v0 ===> openbabel-3.1.1p3 depends on: bzip2-* -> bzip2-1.0.8p0 ===> openbabel-3.1.1p3 depends on: boost-* -> boost-1.84.0p4v0 ===> openbabel-3.1.1p3 depends on: cairo-* -> cairo-1.18.2p0 ===> openbabel-3.1.1p3 depends on: libxml-* -> libxml-2.13.4p0 ===> Verifying specs: c++ c++abi pthread boost_iostreams-mt boost_regex-mt c cairo m xml2 z ===> found c++.10.0 c++abi.7.0 pthread.27.1 boost_iostreams-mt.23.0 boost_regex-mt.23.0 c.100.3 cairo.13.5 m.10.1 xml2.21.0 z.7.1 boost-1.84.0p4v0 bzip2-1.0.8p0 cairo-1.18.2p0 cmake-3.30.5v1 eigen3-3.4.0p0 libxml-2.13.4p0 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p0 Don't run junk because nojunk in graphics/yacreader (Junk lock released for localhost at 1731550995.18) distfiles size=27743669 >>> Running patch in misc/openbabel at 1731550995.37 ===> misc/openbabel ===> Checking files for openbabel-3.1.1p3 `/usr/ports/distfiles/openbabel-3.1.1-source.tar.bz2' is up to date. >> (SHA256) all files: OK ===> Extracting for openbabel-3.1.1p3 ===> Patching for openbabel-3.1.1p3 ===> Applying OpenBSD patch patch-CMakeLists_txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Revise for 3.1.1 release. Taken from |https://github.com/openbabel/openbabel/commit/650b1f829ac47cc84877a330366ec9485da3ec99 | |Index: CMakeLists.txt |--- CMakeLists.txt.orig |+++ CMakeLists.txt -------------------------- Patching file CMakeLists.txt using Plan A... Hunk #1 succeeded at 24. done ===> Applying OpenBSD patch patch-include_openbabel_inchiformat_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/inchiformat.h |--- include/openbabel/inchiformat.h.orig |+++ include/openbabel/inchiformat.h -------------------------- Patching file include/openbabel/inchiformat.h using Plan A... Hunk #1 succeeded at 131. done ===> Applying OpenBSD patch patch-include_openbabel_plugin_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/plugin.h |--- include/openbabel/plugin.h.orig |+++ include/openbabel/plugin.h -------------------------- Patching file include/openbabel/plugin.h using Plan A... Hunk #1 succeeded at 38. done ===> Applying OpenBSD patch patch-scripts_openbabel-R_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-R.i |--- scripts/openbabel-R.i.orig |+++ scripts/openbabel-R.i -------------------------- Patching file scripts/openbabel-R.i using Plan A... Hunk #1 succeeded at 290. done ===> Applying OpenBSD patch patch-scripts_openbabel-csharp_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-csharp.i |--- scripts/openbabel-csharp.i.orig |+++ scripts/openbabel-csharp.i -------------------------- Patching file scripts/openbabel-csharp.i using Plan A... Hunk #1 succeeded at 830. done ===> Applying OpenBSD patch patch-scripts_openbabel-java_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-java.i |--- scripts/openbabel-java.i.orig |+++ scripts/openbabel-java.i -------------------------- Patching file scripts/openbabel-java.i using Plan A... Hunk #1 succeeded at 246. done ===> Applying OpenBSD patch patch-scripts_openbabel-perl_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-perl.i |--- scripts/openbabel-perl.i.orig |+++ scripts/openbabel-perl.i -------------------------- Patching file scripts/openbabel-perl.i using Plan A... Hunk #1 succeeded at 191. done ===> Applying OpenBSD patch patch-scripts_openbabel-php_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-php.i |--- scripts/openbabel-php.i.orig |+++ scripts/openbabel-php.i -------------------------- Patching file scripts/openbabel-php.i using Plan A... Hunk #1 succeeded at 223. done ===> Applying OpenBSD patch patch-scripts_openbabel-python_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-python.i |--- scripts/openbabel-python.i.orig |+++ scripts/openbabel-python.i -------------------------- Patching file scripts/openbabel-python.i using Plan A... Hunk #1 succeeded at 266. done ===> Applying OpenBSD patch patch-scripts_openbabel-ruby_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-ruby.i |--- scripts/openbabel-ruby.i.orig |+++ scripts/openbabel-ruby.i -------------------------- Patching file scripts/openbabel-ruby.i using Plan A... Hunk #1 succeeded at 212. done ===> Applying OpenBSD patch patch-src_ops_sort_cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: src/ops/sort.cpp |--- src/ops/sort.cpp.orig |+++ src/ops/sort.cpp -------------------------- Patching file src/ops/sort.cpp using Plan A... Hunk #1 succeeded at 29. done ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ >>> Running configure in misc/openbabel at 1731551023.05 ===> misc/openbabel ===> Generating configure for openbabel-3.1.1p3 ===> Configuring for openbabel-3.1.1p3 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is Clang 16.0.6 -- The CXX compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/obj/ports/openbabel-3.1.1/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/obj/ports/openbabel-3.1.1/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found LibXml2: /usr/local/lib/libxml2.so.21.0 (found version "2.13.4") -- Found ZLIB: /usr/lib/libz.so.7.1 (found version "1.3.1.1") -- Found wxWidgets: -L/usr/local/lib;-pthread;;;-L/usr/X11R6/lib;-L/usr/X11R6/lib;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.6") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Failed -- Use std::shared_ptr in memory CMake Warning (dev) at CMakeLists.txt:358 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: program_options iostreams regex -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") CMake Warning (dev) at CMakeLists.txt:473 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: filesystem iostreams unit_test_framework regex -- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND' -- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND' -- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS maeparser_LIBRARIES) -- Building existing MaeParser 'v1.2.3' source at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3. CMake Warning (dev) at external/maeparser-v1.2.3/maeparser/CMakeLists.txt:40 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: iostreams regex CMake Warning (dev) at external/maeparser-v1.2.3/maeparser/CMakeLists.txt:44 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Could NOT find Boost (missing: zlib) (found version "1.84.0") -- Using zlib library for iostreams dependency. -- Maestro formats will be supported. Using MaeParser 'v1.2.3' at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND -- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND' -- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND' -- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS coordgen_LIBRARIES coordgen_TEMPLATE_FILE) -- Building existing Coordgen 'master' source at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master. CMake Deprecation Warning at external/coordgen-master/coordgen/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Coordinate generation with Coordgen will be supported Using Coordgen 'master' at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -- Found RapidJSON: /usr/local/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/local/include -- Checking for module 'cairo' -- Found cairo, version 1.18.2 -- Found Cairo: /usr/local/lib/libcairo.so.13.5 -- Cairo found. PNG output will be supported. CMake Warning (dev) at src/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found suitable version "1.84.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: program_options iostreams regex -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.10") CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (79.2s) -- Generating done (1.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_ASM_COMPILER_AR CMAKE_ASM_COMPILER_RANLIB CMAKE_Fortran_COMPILER_AR CMAKE_Fortran_COMPILER_RANLIB CMAKE_OBJCXX_COMPILER_AR CMAKE_OBJCXX_COMPILER_RANLIB CMAKE_OBJC_COMPILER_AR CMAKE_OBJC_COMPILER_RANLIB PYTHON_INCLUDE_DIR PYTHON_LIBRARY_DIRS Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY_DIRS Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY_DIRS -- Build files have been written to: /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1 >>> Running build in misc/openbabel at 1731551105.11 ===> misc/openbabel ===> Building for openbabel-3.1.1p3 Change Dir: '/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1' Run Build Command(s): /usr/local/bin/ninja -v -j 1 [1/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/Buffer.cpp [2/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/MaeBlock.cpp [3/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o -c 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-DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF src/CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/bondtyper.cpp [30/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp FAILED: src/CMakeFiles/openbabel.dir/builder.cpp.o /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:210: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1248:38: warning: Implicit conversion between vector types (''Packet4f' (vector of 4 'float' values)' and ''const Packet4ui' (vector of 4 'unsigned int' values)') is deprecated. In the future, the behavior implied by '-fno-lax-vector-conversions' will be the default. [-Wdeprecate-lax-vec-conv-all] bf_even = plogical_shift_right<16>(even); ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1345:32: error: use of undeclared identifier 'vec_sqrt'; did you mean 'vec_rsqrt'? BF16_TO_F32_UNARY_OP_WRAPPER(vec_sqrt, a); ^~~~~~~~ vec_rsqrt /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1302:22: note: expanded from macro 'BF16_TO_F32_UNARY_OP_WRAPPER' Packet4f op_even = OP(a_even);\ ^ /usr/lib/clang/16/include/altivec.h:8543:34: note: 'vec_rsqrt' declared here static vector float __ATTRS_o_ai vec_rsqrt(vector float __a) { ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:210: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1345:32: error: use of undeclared identifier 'vec_sqrt'; did you mean 'vec_rsqrt'? BF16_TO_F32_UNARY_OP_WRAPPER(vec_sqrt, a); ^~~~~~~~ vec_rsqrt /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1303:21: note: expanded from macro 'BF16_TO_F32_UNARY_OP_WRAPPER' Packet4f op_odd = OP(a_odd);\ ^ /usr/lib/clang/16/include/altivec.h:8543:34: note: 'vec_rsqrt' declared here static vector float __ATTRS_o_ai vec_rsqrt(vector float __a) { ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:210: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1231:34: warning: Implicit conversion between vector types (''Packet4f' (vector of 4 'float' values)' and ''const Packet4ui' (vector of 4 'unsigned int' values)') is deprecated. In the future, the behavior implied by '-fno-lax-vector-conversions' will be the default. [-Wdeprecate-lax-vec-conv-all] return plogical_shift_left<16>(reinterpret_cast(bf.m_val)); ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:350: In file included from /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:18: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:41: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:74: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:109: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:144: error: use of undeclared identifier 'Packet1cd' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:177: error: use of undeclared identifier 'Packet1cd' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:350: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:70:11: error: unknown type name 'Packet2d' typedef Packet2d vectortype; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:72:23: error: use of undeclared identifier 'Packet2d' typedef PacketBlock rhstype; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:656:44: error: use of undeclared identifier 'Packet2d' struct dhs_pack ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:723:44: error: use of undeclared identifier 'Packet2d' struct dhs_pack ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:1250:14: error: unknown type name 'Packet2l' const static Packet2l mask21 = { -1, 0 }; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:1267:21: error: unknown type name 'Packet2d' EIGEN_ALWAYS_INLINE Packet2d bmask(const int remaining_rows) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:1267:36: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE Packet2d bmask(const int remaining_rows) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2410:5: error: nested name specifier 'gemm_pack_lhs::' for declaration does not refer into a class, class template or class template partial specialization ::operator()(double* blockA, const DataMapper& lhs, Index depth, Index rows, Index stride, Index offset) ~~^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2412:41: error: use of undeclared identifier 'Packet2d' dhs_pack pack; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2413:10: error: use of undeclared identifier 'blockA' pack(blockA, lhs, depth, rows, stride, offset); ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2413:18: error: use of undeclared identifier 'lhs' pack(blockA, lhs, depth, rows, stride, offset); ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2413:23: error: use of undeclared identifier 'depth' pack(blockA, lhs, depth, rows, stride, offset); ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 2 warnings and 20 errors generated. ninja: build stopped: subcommand failed. *** Error 1 in misc/openbabel (/usr/ports/devel/cmake/cmake.port.mk:50 'do-build': @cd /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1 && exe...) *** Error 2 in misc/openbabel (/usr/ports/infrastructure/mk/bsd.port.mk:3065 '/usr/obj/ports/openbabel-3.1.1/.build_done': @cd /usr/ports/mi...) *** Error 2 in misc/openbabel (/usr/ports/infrastructure/mk/bsd.port.mk:2712 'build': @lock=openbabel-3.1.1p3; export _LOCKS_HELD=" openbab...) ===> Exiting misc/openbabel with an error *** Error 1 in /usr/ports (infrastructure/mk/bsd.port.subdir.mk:144 'build': @: ${echo_msg:=echo}; : ${target:=build}; for i in ; do eval...) >>> Ended at 1731551257.12 max_stuck=9.04/depends=3.70/show-prepare-results=9.01/patch=27.73/configure=82.13/build=152.07 Error: job failed with 512 on localhost at 1731551257