>>> Building on localhost under misc/openbabel BDEPENDS = [textproc/rapidjson;devel/boost;graphics/cairo;textproc/libxml;math/eigen3;devel/cmake/core;archivers/bzip2;devel/ninja] DIST = [misc/openbabel:openbabel-3.1.1-source.tar.bz2] FULLPKGNAME = openbabel-3.1.1p3 RDEPENDS = [devel/boost;graphics/cairo;textproc/libxml] (Junk lock obtained for localhost at 1745523525.00) >>> Running depends in misc/openbabel at 1745523525.13 last junk was in security/ruby-bcrypt,ruby33 /usr/sbin/pkg_add -aI -Drepair eigen3-3.4.0p0 libxml-2.13.7 rapidjson-1.1.0.20230928p1 was: /usr/sbin/pkg_add -aI -Drepair boost-1.84.0p8v0 bzip2-1.0.8p0 cairo-1.18.4 cmake-core-3.31.7 eigen3-3.4.0p0 libxml-2.13.7 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p1 /usr/sbin/pkg_add -aI -Drepair eigen3-3.4.0p0 libxml-2.13.7 rapidjson-1.1.0.20230928p1 >>> Running show-prepare-results in misc/openbabel at 1745523528.44 ===> misc/openbabel ===> Building from scratch openbabel-3.1.1p3 ===> openbabel-3.1.1p3 depends on: eigen3-* -> eigen3-3.4.0p0 ===> openbabel-3.1.1p3 depends on: rapidjson-* -> rapidjson-1.1.0.20230928p1 ===> openbabel-3.1.1p3 depends on: cmake-core-* -> cmake-core-3.31.7 ===> openbabel-3.1.1p3 depends on: ninja-* -> ninja-1.11.1p0v0 ===> openbabel-3.1.1p3 depends on: bzip2-* -> bzip2-1.0.8p0 ===> openbabel-3.1.1p3 depends on: boost-* -> boost-1.84.0p8v0 ===> openbabel-3.1.1p3 depends on: cairo-* -> cairo-1.18.4 ===> openbabel-3.1.1p3 depends on: libxml-* -> libxml-2.13.7 ===> Verifying specs: c++ c++abi pthread boost_iostreams-mt boost_regex-mt c cairo m xml2 z ===> found c++.10.0 c++abi.7.0 pthread.27.1 boost_iostreams-mt.23.0 boost_regex-mt.23.0 c.100.3 cairo.13.5 m.10.1 xml2.21.0 z.7.1 boost-1.84.0p8v0 bzip2-1.0.8p0 cairo-1.18.4 cmake-core-3.31.7 eigen3-3.4.0p0 libxml-2.13.7 ninja-1.11.1p0v0 rapidjson-1.1.0.20230928p1 Don't run junk because nojunk in databases/pgmodeler (Junk lock released for localhost at 1745523533.05) distfiles size=27743669 >>> Running patch in misc/openbabel at 1745523533.14 ===> misc/openbabel ===> Checking files for openbabel-3.1.1p3 `/usr/ports/distfiles/openbabel-3.1.1-source.tar.bz2' is up to date. >> (SHA256) all files: OK ===> Extracting for openbabel-3.1.1p3 ===> Patching for openbabel-3.1.1p3 ===> Applying OpenBSD patch patch-CMakeLists_txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Revise for 3.1.1 release. Taken from |https://github.com/openbabel/openbabel/commit/650b1f829ac47cc84877a330366ec9485da3ec99 | |Index: CMakeLists.txt |--- CMakeLists.txt.orig |+++ CMakeLists.txt -------------------------- Patching file CMakeLists.txt using Plan A... Hunk #1 succeeded at 24. done ===> Applying OpenBSD patch patch-include_openbabel_inchiformat_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/inchiformat.h |--- include/openbabel/inchiformat.h.orig |+++ include/openbabel/inchiformat.h -------------------------- Patching file include/openbabel/inchiformat.h using Plan A... Hunk #1 succeeded at 131. done ===> Applying OpenBSD patch patch-include_openbabel_plugin_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/plugin.h |--- include/openbabel/plugin.h.orig |+++ include/openbabel/plugin.h -------------------------- Patching file include/openbabel/plugin.h using Plan A... Hunk #1 succeeded at 38. done ===> Applying OpenBSD patch patch-scripts_openbabel-R_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-R.i |--- scripts/openbabel-R.i.orig |+++ scripts/openbabel-R.i -------------------------- Patching file scripts/openbabel-R.i using Plan A... Hunk #1 succeeded at 290. done ===> Applying OpenBSD patch patch-scripts_openbabel-csharp_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-csharp.i |--- scripts/openbabel-csharp.i.orig |+++ scripts/openbabel-csharp.i -------------------------- Patching file scripts/openbabel-csharp.i using Plan A... Hunk #1 succeeded at 830. done ===> Applying OpenBSD patch patch-scripts_openbabel-java_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-java.i |--- scripts/openbabel-java.i.orig |+++ scripts/openbabel-java.i -------------------------- Patching file scripts/openbabel-java.i using Plan A... Hunk #1 succeeded at 246. done ===> Applying OpenBSD patch patch-scripts_openbabel-perl_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-perl.i |--- scripts/openbabel-perl.i.orig |+++ scripts/openbabel-perl.i -------------------------- Patching file scripts/openbabel-perl.i using Plan A... Hunk #1 succeeded at 191. done ===> Applying OpenBSD patch patch-scripts_openbabel-php_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-php.i |--- scripts/openbabel-php.i.orig |+++ scripts/openbabel-php.i -------------------------- Patching file scripts/openbabel-php.i using Plan A... Hunk #1 succeeded at 223. done ===> Applying OpenBSD patch patch-scripts_openbabel-python_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-python.i |--- scripts/openbabel-python.i.orig |+++ scripts/openbabel-python.i -------------------------- Patching file scripts/openbabel-python.i using Plan A... Hunk #1 succeeded at 266. done ===> Applying OpenBSD patch patch-scripts_openbabel-ruby_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-ruby.i |--- scripts/openbabel-ruby.i.orig |+++ scripts/openbabel-ruby.i -------------------------- Patching file scripts/openbabel-ruby.i using Plan A... Hunk #1 succeeded at 212. done ===> Applying OpenBSD patch patch-src_ops_sort_cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: src/ops/sort.cpp |--- src/ops/sort.cpp.orig |+++ src/ops/sort.cpp -------------------------- Patching file src/ops/sort.cpp using Plan A... Hunk #1 succeeded at 29. done ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ >>> Running configure in misc/openbabel at 1745523560.64 ===> misc/openbabel ===> Generating configure for openbabel-3.1.1p3 ===> Configuring for openbabel-3.1.1p3 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 16.0.6 -- The CXX compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/obj/ports/openbabel-3.1.1/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/obj/ports/openbabel-3.1.1/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found LibXml2: /usr/local/lib/libxml2.so.21.0 (found version "2.13.7") -- Found ZLIB: /usr/lib/libz.so.7.1 (found version "1.3.1.1") -- Found wxWidgets: -L/usr/local/lib;-pthread;;;-L/usr/X11R6/lib;-L/usr/X11R6/lib;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.7") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Failed -- Use std::shared_ptr in memory CMake Warning (dev) at CMakeLists.txt:358 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: program_options iostreams -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") CMake Warning (dev) at CMakeLists.txt:473 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: filesystem iostreams unit_test_framework -- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND' -- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND' -- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS maeparser_LIBRARIES) -- Building existing MaeParser 'v1.2.3' source at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3. CMake Deprecation Warning at external/maeparser-v1.2.3/maeparser/CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at external/maeparser-v1.2.3/maeparser/CMakeLists.txt:40 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: iostreams CMake Warning (dev) at external/maeparser-v1.2.3/maeparser/CMakeLists.txt:44 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find boost_zlib (missing: boost_zlib_DIR) -- Could NOT find Boost: missing: zlib (found /usr/local/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0")) -- Using zlib library for iostreams dependency. -- Maestro formats will be supported. Using MaeParser 'v1.2.3' at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND -- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND' -- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND' -- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS coordgen_LIBRARIES coordgen_TEMPLATE_FILE) -- Building existing Coordgen 'master' source at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master. CMake Deprecation Warning at external/coordgen-master/coordgen/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Coordinate generation with Coordgen will be supported Using Coordgen 'master' at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -- Found RapidJSON: /usr/local/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/local/include -- Checking for module 'cairo' -- Found cairo, version 1.18.4 -- Found Cairo: /usr/local/lib/libcairo.so.13.5 -- Cairo found. PNG output will be supported. CMake Warning (dev) at src/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found suitable version "1.84.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE CMake Warning (dev) at tools/CMakeLists.txt:6 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/local/lib/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.12 (found version "3.12.10") CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (44.8s) -- Generating done (1.7s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_ASM_COMPILER_AR CMAKE_ASM_COMPILER_RANLIB CMAKE_Fortran_COMPILER_AR CMAKE_Fortran_COMPILER_RANLIB CMAKE_OBJCXX_COMPILER_AR CMAKE_OBJCXX_COMPILER_RANLIB CMAKE_OBJC_COMPILER_AR CMAKE_OBJC_COMPILER_RANLIB PYTHON_INCLUDE_DIR PYTHON_LIBRARY_DIRS Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY_DIRS Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY_DIRS -- Build files have been written to: /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1 >>> Running build in misc/openbabel at 1745523608.25 ===> misc/openbabel ===> Building for openbabel-3.1.1p3 Change Dir: '/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1' Run Build Command(s): /usr/local/bin/ninja -v -j 1 [1/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -isystem /usr/local/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/Buffer.cpp [2/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -isystem /usr/local/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/MaeBlock.cpp [3/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -isystem /usr/local/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o -MF 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-I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -isystem /usr/local/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF src/CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/bondtyper.cpp [30/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -isystem /usr/local/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp FAILED: src/CMakeFiles/openbabel.dir/builder.cpp.o /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -isystem /usr/local/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF src/CMakeFiles/openbabel.dir/builder.cpp.o.d -o src/CMakeFiles/openbabel.dir/builder.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:210: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1248:38: warning: Implicit conversion between vector types (''Packet4f' (vector of 4 'float' values)' and ''const Packet4ui' (vector of 4 'unsigned int' values)') is deprecated. In the future, the behavior implied by '-fno-lax-vector-conversions' will be the default. [-Wdeprecate-lax-vec-conv-all] bf_even = plogical_shift_right<16>(even); ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1345:32: error: use of undeclared identifier 'vec_sqrt'; did you mean 'vec_rsqrt'? BF16_TO_F32_UNARY_OP_WRAPPER(vec_sqrt, a); ^~~~~~~~ vec_rsqrt /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1302:22: note: expanded from macro 'BF16_TO_F32_UNARY_OP_WRAPPER' Packet4f op_even = OP(a_even);\ ^ /usr/lib/clang/16/include/altivec.h:8543:34: note: 'vec_rsqrt' declared here static vector float __ATTRS_o_ai vec_rsqrt(vector float __a) { ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:210: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1345:32: error: use of undeclared identifier 'vec_sqrt'; did you mean 'vec_rsqrt'? BF16_TO_F32_UNARY_OP_WRAPPER(vec_sqrt, a); ^~~~~~~~ vec_rsqrt /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1303:21: note: expanded from macro 'BF16_TO_F32_UNARY_OP_WRAPPER' Packet4f op_odd = OP(a_odd);\ ^ /usr/lib/clang/16/include/altivec.h:8543:34: note: 'vec_rsqrt' declared here static vector float __ATTRS_o_ai vec_rsqrt(vector float __a) { ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:210: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/PacketMath.h:1231:34: warning: Implicit conversion between vector types (''Packet4f' (vector of 4 'float' values)' and ''const Packet4ui' (vector of 4 'unsigned int' values)') is deprecated. In the future, the behavior implied by '-fno-lax-vector-conversions' will be the default. [-Wdeprecate-lax-vec-conv-all] return plogical_shift_left<16>(reinterpret_cast(bf.m_val)); ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:350: In file included from /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:18: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:41: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:74: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:109: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:144: error: use of undeclared identifier 'Packet1cd' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h:192:177: error: use of undeclared identifier 'Packet1cd' EIGEN_ALWAYS_INLINE void bcouple_common(PacketBlock& taccReal, PacketBlock& taccImag, PacketBlock& acc1, PacketBlock& acc2) ^ In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/builder.cpp:33: In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/distgeom.h:34: In file included from /usr/local/include/eigen3/Eigen/Core:350: /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:70:11: error: unknown type name 'Packet2d' typedef Packet2d vectortype; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:72:23: error: use of undeclared identifier 'Packet2d' typedef PacketBlock rhstype; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:656:44: error: use of undeclared identifier 'Packet2d' struct dhs_pack ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:723:44: error: use of undeclared identifier 'Packet2d' struct dhs_pack ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:1250:14: error: unknown type name 'Packet2l' const static Packet2l mask21 = { -1, 0 }; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:1267:21: error: unknown type name 'Packet2d' EIGEN_ALWAYS_INLINE Packet2d bmask(const int remaining_rows) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:1267:36: error: use of undeclared identifier 'Packet2d' EIGEN_ALWAYS_INLINE Packet2d bmask(const int remaining_rows) ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2410:5: error: nested name specifier 'gemm_pack_lhs::' for declaration does not refer into a class, class template or class template partial specialization ::operator()(double* blockA, const DataMapper& lhs, Index depth, Index rows, Index stride, Index offset) ~~^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2412:41: error: use of undeclared identifier 'Packet2d' dhs_pack pack; ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2413:10: error: use of undeclared identifier 'blockA' pack(blockA, lhs, depth, rows, stride, offset); ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2413:18: error: use of undeclared identifier 'lhs' pack(blockA, lhs, depth, rows, stride, offset); ^ /usr/local/include/eigen3/Eigen/src/Core/arch/AltiVec/MatrixProduct.h:2413:23: error: use of undeclared identifier 'depth' pack(blockA, lhs, depth, rows, stride, offset); ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 2 warnings and 20 errors generated. ninja: build stopped: subcommand failed. *** Error 1 in misc/openbabel (/usr/ports/devel/cmake/cmake.port.mk:50 'do-build': @cd /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1 && exe...) *** Error 2 in misc/openbabel (/usr/ports/infrastructure/mk/bsd.port.mk:3065 '/usr/obj/ports/openbabel-3.1.1/.build_done': @cd /usr/ports/mi...) *** Error 2 in misc/openbabel (/usr/ports/infrastructure/mk/bsd.port.mk:2712 'build': @lock=openbabel-3.1.1p3; export _LOCKS_HELD=" openbab...) ===> Exiting misc/openbabel with an error *** Error 1 in /usr/ports (infrastructure/mk/bsd.port.subdir.mk:144 'build': @: ${echo_msg:=echo}; : ${target:=build}; for i in ; do eval...) >>> Ended at 1745523748.47 max_stuck=10.11/depends=3.34/show-prepare-results=4.71/patch=27.52/configure=47.56/build=140.32 Error: job failed with 512 on localhost at 1745523748