>>> Building on localhost under misc/openbabel BDEPENDS = [archivers/bzip2;textproc/libxml;devel/cmake;math/eigen3;graphics/cairo;devel/ninja;devel/boost] DIST = [misc/openbabel:openbabel-3.1.1-source.tar.bz2] FULLPKGNAME = openbabel-3.1.1p2 RDEPENDS = [textproc/libxml;graphics/cairo;devel/boost] (Junk lock obtained for localhost at 1719155378.51) >>> Running depends in misc/openbabel at 1719155378.60 last junk was in x11/kde-applications/konsole /usr/sbin/pkg_add -aI -Drepair cairo-1.18.0 libxml-2.12.8 was: /usr/sbin/pkg_add -aI -Drepair boost-1.84.0p3v0 bzip2-1.0.8p0 cairo-1.18.0 cmake-3.29.5v1 eigen3-3.4.0 libxml-2.12.8 ninja-1.11.1p0v0 /usr/sbin/pkg_add -aI -Drepair cairo-1.18.0 libxml-2.12.8 >>> Running show-prepare-results in misc/openbabel at 1719155383.12 ===> misc/openbabel ===> Building from scratch openbabel-3.1.1p2 ===> openbabel-3.1.1p2 depends on: eigen3-* -> eigen3-3.4.0 ===> openbabel-3.1.1p2 depends on: cmake-* -> cmake-3.29.5v1 ===> openbabel-3.1.1p2 depends on: ninja-* -> ninja-1.11.1p0v0 ===> openbabel-3.1.1p2 depends on: bzip2-* -> bzip2-1.0.8p0 ===> openbabel-3.1.1p2 depends on: boost-* -> boost-1.84.0p3v0 ===> openbabel-3.1.1p2 depends on: cairo-* -> cairo-1.18.0 ===> openbabel-3.1.1p2 depends on: libxml-* -> libxml-2.12.8 ===> Verifying specs: c++ c++abi pthread boost_iostreams-mt boost_regex-mt c cairo m xml2 z ===> found c++.10.0 c++abi.7.0 pthread.27.1 boost_iostreams-mt.23.0 boost_regex-mt.23.0 c.100.1 cairo.13.4 m.10.1 xml2.20.0 z.7.0 boost-1.84.0p3v0 bzip2-1.0.8p0 cairo-1.18.0 cmake-3.29.5v1 eigen3-3.4.0 libxml-2.12.8 ninja-1.11.1p0v0 Don't run junk because nojunk in x11/qt6/qt3d (Junk lock released for localhost at 1719155386.60) distfiles size=27743669 >>> Running patch in misc/openbabel at 1719155386.67 ===> misc/openbabel ===> Checking files for openbabel-3.1.1p2 `/usr/ports/distfiles/openbabel-3.1.1-source.tar.bz2' is up to date. >> (SHA256) openbabel-3.1.1-source.tar.bz2: OK ===> Extracting for openbabel-3.1.1p2 ===> Patching for openbabel-3.1.1p2 ===> Applying OpenBSD patch patch-CMakeLists_txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Revise for 3.1.1 release. Taken from |https://github.com/openbabel/openbabel/commit/650b1f829ac47cc84877a330366ec9485da3ec99 | |Index: CMakeLists.txt |--- CMakeLists.txt.orig |+++ CMakeLists.txt -------------------------- Patching file CMakeLists.txt using Plan A... Hunk #1 succeeded at 24. done ===> Applying OpenBSD patch patch-include_openbabel_inchiformat_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/inchiformat.h |--- include/openbabel/inchiformat.h.orig |+++ include/openbabel/inchiformat.h -------------------------- Patching file include/openbabel/inchiformat.h using Plan A... Hunk #1 succeeded at 131. done ===> Applying OpenBSD patch patch-include_openbabel_plugin_h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: include/openbabel/plugin.h |--- include/openbabel/plugin.h.orig |+++ include/openbabel/plugin.h -------------------------- Patching file include/openbabel/plugin.h using Plan A... Hunk #1 succeeded at 38. done ===> Applying OpenBSD patch patch-scripts_openbabel-R_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-R.i |--- scripts/openbabel-R.i.orig |+++ scripts/openbabel-R.i -------------------------- Patching file scripts/openbabel-R.i using Plan A... Hunk #1 succeeded at 290. done ===> Applying OpenBSD patch patch-scripts_openbabel-csharp_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-csharp.i |--- scripts/openbabel-csharp.i.orig |+++ scripts/openbabel-csharp.i -------------------------- Patching file scripts/openbabel-csharp.i using Plan A... Hunk #1 succeeded at 830. done ===> Applying OpenBSD patch patch-scripts_openbabel-java_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-java.i |--- scripts/openbabel-java.i.orig |+++ scripts/openbabel-java.i -------------------------- Patching file scripts/openbabel-java.i using Plan A... Hunk #1 succeeded at 246. done ===> Applying OpenBSD patch patch-scripts_openbabel-perl_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-perl.i |--- scripts/openbabel-perl.i.orig |+++ scripts/openbabel-perl.i -------------------------- Patching file scripts/openbabel-perl.i using Plan A... Hunk #1 succeeded at 191. done ===> Applying OpenBSD patch patch-scripts_openbabel-php_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-php.i |--- scripts/openbabel-php.i.orig |+++ scripts/openbabel-php.i -------------------------- Patching file scripts/openbabel-php.i using Plan A... Hunk #1 succeeded at 223. done ===> Applying OpenBSD patch patch-scripts_openbabel-python_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-python.i |--- scripts/openbabel-python.i.orig |+++ scripts/openbabel-python.i -------------------------- Patching file scripts/openbabel-python.i using Plan A... Hunk #1 succeeded at 266. done ===> Applying OpenBSD patch patch-scripts_openbabel-ruby_i Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: scripts/openbabel-ruby.i |--- scripts/openbabel-ruby.i.orig |+++ scripts/openbabel-ruby.i -------------------------- Patching file scripts/openbabel-ruby.i using Plan A... Hunk #1 succeeded at 212. done ===> Applying OpenBSD patch patch-src_ops_sort_cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |Remove std::binary_function, which is removed in C++17. Taken from |https://github.com/openbabel/openbabel/pull/2464 | |Index: src/ops/sort.cpp |--- src/ops/sort.cpp.orig |+++ src/ops/sort.cpp -------------------------- Patching file src/ops/sort.cpp using Plan A... Hunk #1 succeeded at 29. done ===> Compiler link: clang -> /usr/bin/clang ===> Compiler link: clang++ -> /usr/bin/clang++ ===> Compiler link: cc -> /usr/bin/cc ===> Compiler link: c++ -> /usr/bin/c++ >>> Running configure in misc/openbabel at 1719155406.18 ===> misc/openbabel ===> Generating configure for openbabel-3.1.1p2 ===> Configuring for openbabel-3.1.1p2 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is Clang 16.0.6 -- The CXX compiler identification is Clang 16.0.6 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/obj/ports/openbabel-3.1.1/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/obj/ports/openbabel-3.1.1/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:14 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Using included inchi library. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Found LibXml2: /usr/local/lib/libxml2.so.20.0 (found version "2.12.8") -- Found ZLIB: /usr/lib/libz.so.7.0 (found version "1.3.1.1") -- Found wxWidgets: -L/usr/local/lib;-pthread;;;-L/usr/X11R6/lib;-L/usr/X11R6/lib;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.5") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Failed -- Use std::shared_ptr in memory -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: program_options iostreams regex -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: filesystem iostreams unit_test_framework regex -- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND' -- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND' -- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS maeparser_LIBRARIES) -- Building existing MaeParser 'v1.2.3' source at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: iostreams regex -- Could NOT find Boost (missing: Boost_DIR) -- Could NOT find Boost (missing: zlib) (found version "1.84.0") -- Using zlib library for iostreams dependency. -- Maestro formats will be supported. Using MaeParser 'v1.2.3' at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND -- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND' -- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND' -- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS coordgen_LIBRARIES coordgen_TEMPLATE_FILE) -- Building existing Coordgen 'master' source at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master. CMake Deprecation Warning at external/coordgen-master/coordgen/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Coordinate generation with Coordgen will be supported Using Coordgen 'master' at /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -- Found RapidJSON: /usr/local/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/local/include -- Checking for module 'cairo' -- Found cairo, version 1.18.0 -- Found Cairo: /usr/local/lib/libcairo.so.13.4 -- Cairo found. PNG output will be supported. -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found suitable version "1.84.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE -- Could NOT find Boost (missing: Boost_DIR) -- Found Boost: /usr/local/include (found version "1.84.0") found components: program_options iostreams regex -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:29 (FIND_PACKAGE): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): test/CMakeLists.txt:226 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.9") CMake Deprecation Warning at scripts/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (39.5s) -- Generating done (1.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_ASM_COMPILER_AR CMAKE_ASM_COMPILER_RANLIB CMAKE_Fortran_COMPILER_AR CMAKE_Fortran_COMPILER_RANLIB CMAKE_OBJCXX_COMPILER_AR CMAKE_OBJCXX_COMPILER_RANLIB CMAKE_OBJC_COMPILER_AR CMAKE_OBJC_COMPILER_RANLIB PYTHON_INCLUDE_DIR PYTHON_LIBRARY_DIRS Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY_DIRS Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY_DIRS -- Build files have been written to: /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1 >>> Running build in misc/openbabel at 1719155449.11 ===> misc/openbabel ===> Building for openbabel-3.1.1p2 Change Dir: '/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1' Run Build Command(s): /usr/local/bin/ninja -v -j 1 [1/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Buffer.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/Buffer.cpp [2/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeBlock.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/MaeBlock.cpp [3/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/MaeParser.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/MaeParser.cpp [4/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Reader.cpp.o -MF external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Reader.cpp.o.d -o external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Reader.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser/Reader.cpp [5/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBOOST_ALL_DYN_LINK -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DIN_MAEPARSER -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeparser_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -fvisibility=hidden -MD -MT external/maeparser-v1.2.3/maeparser/CMakeFiles/maeparser.dir/Writer.cpp.o -MF 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-I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF src/CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o src/CMakeFiles/openbabel.dir/confsearch.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/confsearch.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/confsearch.cpp:134:59: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, double>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/confsearch.cpp:444:70: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, double>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 2 warnings generated. 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std::bind1st (equal_to(), atomId); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'binder1st>' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); ^ /usr/include/c++/v1/__functional/binder1st.h:25:28: note: 'binder1st>' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 binder1st ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp:3005:85: warning: 'bind1st, unsigned long>' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'binder1st>' is deprecated [-Wdeprecated-declarations] const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); ^ /usr/include/c++/v1/__functional/binder1st.h:25:28: note: 'binder1st>' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 binder1st ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 4 warnings generated. 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/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24: /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning 2 warnings generated. [103/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp [104/556] : && /usr/obj/ports/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -pthread -DNDEBUG -shared -o lib/plugin_descriptors.so src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -L/usr/local/lib -L/usr/X11R6/lib -Wl,-z,origin,-rpath,/usr/local/lib:/usr/X11R6/lib:/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.0 lib/libopenbabel.so.6.1 lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.0 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [105/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/fingerprints/finger2.cpp [106/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/fingerprints/finger3.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/fingerprints/finger3.cpp:258:34: warning: unsequenced modification and access to 'div' [-Wunsequenced] ngrp = (num + div -1)/div--; //rounds up ~~~ ^ 1 warning generated. [107/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o 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-DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c 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-I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/forcefields/forcefielduff.cpp [113/556] : && /usr/obj/ports/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -pthread -DNDEBUG -shared -o lib/plugin_forcefields.so src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -L/usr/local/lib 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/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/charges/mmff94.cpp [145/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d 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src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/charges/qeq.cpp [148/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/charges/qtpie.cpp [149/556] : && /usr/obj/ports/openbabel-3.1.1/bin/c++ -fPIC -O2 -pipe -pthread -DNDEBUG -shared -o lib/plugin_charges.so src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -L/usr/local/lib -L/usr/X11R6/lib -Wl,-z,origin,-rpath,/usr/local/lib:/usr/X11R6/lib:/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/lib: /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.0 lib/libopenbabel.so.6.1 lib/libmaeparser.so.0.0 /usr/local/lib/libboost_iostreams-mt.so.23.0 /usr/local/lib/libboost_regex-mt.so.23.0 lib/libcoordgen.so.0.0 /usr/lib/libm.so.10.1 /usr/lib/libz.so.7.0 -pthread -Wl,-rpath-link,/usr/X11R6/lib:/usr/local/lib && : [150/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/smilesformat.cpp [151/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/mdlformat.cpp [152/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/mol2format.cpp [153/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/pdbformat.cpp [154/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/inchiformat.cpp In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/inchiformat.cpp:32: /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning 2 warnings generated. [155/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/getinchi.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/getinchi.cpp:166:22: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare] while((ch=is.get())!=EOF) ~~~~~~~~~~~~~^ ~~~ 1 warning generated. [156/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/ops/unique.cpp In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/ops/unique.cpp:23: /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: warning: while loop has empty body [-Wempty-body] while(p1!=s1.end() && isdigit(*p1++)); --p1; ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:148:50: note: put the semicolon on a separate line to silence this warning /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: warning: while loop has empty body [-Wempty-body] while(p2!=s2.end() && isdigit(*p2++)); --p2; ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/inchiformat.h:153:50: note: put the semicolon on a separate line to silence this warning 2 warnings generated. [157/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/asciiformat.cpp [158/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/depict/asciipainter.cpp [159/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/copyformat.cpp [160/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/MNAformat.cpp [161/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF src/formats/CMakeFiles/molreport.dir/molreport.cpp.o.d -o src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/molreport.cpp [162/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/nulformat.cpp [163/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/painterformat.cpp [164/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/depict/commandpainter.cpp [165/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/povrayformat.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/povrayformat.cpp:526:71: warning: 'bind1st, char>' is deprecated [-Wdeprecated-declarations] bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, char>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/povrayformat.cpp:587:71: warning: 'bind1st, char>' is deprecated [-Wdeprecated-declarations] bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); ^ /usr/include/c++/v1/__functional/binder1st.h:44:1: note: 'bind1st, char>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 2 warnings generated. 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-I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:668:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(less_equal(), 0)) || ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:671:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(greater(), MxBond)) || ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:674:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(less(), 0)) || ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/fchkformat.cpp:677:36: warning: 'bind2nd, int>' is deprecated [-Wdeprecated-declarations] bind2nd(greater(), Natoms))) ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, int>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 4 warnings generated. 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-I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/nwchemformat.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] else if (vs[0][0] == '2') ^ 1 warning generated. 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/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/turbomoleformat.cpp [196/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG 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/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/vaspformat.cpp:589:29: warning: 'bind2nd, double>' is deprecated [-Wdeprecated-declarations] std::bind2nd(std::divides(), max / 100.0)); ^ /usr/include/c++/v1/__functional/binder2nd.h:44:1: note: 'bind2nd, double>' has been explicitly marked deprecated here _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY ^ /usr/include/c++/v1/__config:796:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /usr/include/c++/v1/__config:781:49: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__((deprecated)) ^ 2 warnings generated. 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-I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/chemdrawcdx.cpp [266/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/chemkinformat.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ 2 warnings generated. 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src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/pubchem.cpp [276/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o -MF src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o.d -o src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/xml.cpp [277/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -MF src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o.d -o src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/xmlformat.cpp [278/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o -MF src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o.d -o src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/xml.cpp [279/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -MF src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o.d -o src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:706:10: warning: enumeration value 'ARRHENIUS' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:734:10: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] switch(pRD->ReactionType) ^~~~~~~~~~~~~~~~~ 2 warnings generated. [280/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -MF src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o.d -o src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/xml/xml.cpp [281/556] /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -MF src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o.d -o src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp FAILED: src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o /usr/obj/ports/openbabel-3.1.1/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/usr/local/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/data -I/usr/local/include/eigen3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/coordgen-master -I/usr/local/include/cairo -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/inchi -I/usr/local/include/libxml2 -I/usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/external/maeparser-v1.2.3/maeparser -isystem /usr/local/lib/wx/include/gtk3-unicode-3.2 -isystem /usr/local/include/wx-3.2 -isystem /usr/X11R6/include -O2 -pipe -pthread -DNDEBUG -std=gnu++11 -fPIC -pthread -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -MF src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o.d -o src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp In file included from /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp:19: /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1/include/openbabel/json.h:22:10: fatal error: 'rapidjson/document.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~~ 1 error generated. ninja: build stopped: subcommand failed. *** Error 1 in misc/openbabel (/usr/ports/devel/cmake/cmake.port.mk:50 'do-build': @cd /usr/obj/ports/openbabel-3.1.1/openbabel-3.1.1 && exe...) *** Error 2 in misc/openbabel (/usr/ports/infrastructure/mk/bsd.port.mk:3057 '/usr/obj/ports/openbabel-3.1.1/.build_done': @cd /usr/ports/mi...) *** Error 2 in misc/openbabel (/usr/ports/infrastructure/mk/bsd.port.mk:2704 'build': @lock=openbabel-3.1.1p2; export _LOCKS_HELD=" openbab...) ===> Exiting misc/openbabel with an error *** Error 1 in /usr/ports (infrastructure/mk/bsd.port.subdir.mk:144 'build': @: ${echo_msg:=echo}; : ${target:=build}; for i in ; do eval...) >>> Ended at 1719157899.67 max_stuck=43.27/depends=4.55/show-prepare-results=3.53/patch=19.52/configure=42.90/build=2450.64 Error: job failed with 512 on localhost at 1719157899